Research workbench
Crystal structure of ribonucleotide reductase nrdf from bacillus anthracis aerobically soaked with ferrous ions (photo-reduced)
Analyse Crystal structure of ribonucleotide reductase nrdf from bacillus anthracis… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6QO7
- Type
- protein
- Length
- 579 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Ribonucleoside-diphosphate reductase subunit beta
- EC
- 1.17.4.1
- UniProt
- Q81TB4
- Ligands
- FE2, CL
- Pockets
- 3 · best druggability 0.52
Structure
x-ray diffraction · 2 distinct chains · 78% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Ribonucleoside-diphosphate reductase subunit beta (EC 1.17.4.1) | protein | 291 | 78% helix, 0% strand | Q81TB4 |
| B | Ribonucleoside-diphosphate reductase subunit beta (EC 1.17.4.1) | protein | 288 | 77% helix, 0% strand | Q81TB4 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 216 | 0.52 | 0.77 | 28 | empty |
| 2 | 173 | 0.49 | 0.77 | 26 | empty |
| 3 | 52 | 0.33 | 0.78 | 13 | empty |
Interfaces
1 interface between chains.
- A–B · 2322 Ų buried · 23 hydrogen bonds · protein-protein
Compared structures
- 6QO7 · Crystal structure of ribonucleotide reductase NrdF from Bacillus anthracis aerobically… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q81TB4
- Elsewhere: RCSB PDB 6QO7 · PDBe 6QO7 · UniProt Q81TB4
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