Research workbench
Apo state of chemotaxis sensor odp from T. denticola
Analyse Apo state of chemotaxis sensor odp from T. denticola in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6QNM
- Type
- protein
- Length
- 479 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Oxygen-binding di-iron protein
- UniProt
- M2CWM4
- Pockets
- 3 · best druggability 0.76
Structure
x-ray diffraction · 2 distinct chains · 30% helix, 28% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Oxygen-binding di-iron protein | protein | 244 | 30% helix, 28% strand | M2CWM4 |
| B | Oxygen-binding di-iron protein | protein | 235 | 31% helix, 29% strand | M2CWM4 |
Pockets
3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 388 | 0.76 | 0.86 | 52 | empty |
| 2 | 533 | 0.75 | 0.83 | 52 | empty |
| 3 | 100 | 0.48 | 0.81 | 19 | empty |
Interfaces
1 interface between chains.
- A–B · 1925 Ų buried · 19 hydrogen bonds · protein-protein
Compared structures
- 6QNM · Apo state of chemotaxis sensor ODP from T. denticola · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt M2CWM4
- Elsewhere: RCSB PDB 6QNM · PDBe 6QNM · UniProt M2CWM4
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