Research workbench
Identificationand characterization of an oxalylfrom grass pea (lathyrus sativuscoa-synthetase L.)
Analyse Identificationand characterization of an oxalylfrom grass pea (lathyrus… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6QJZ
- Type
- protein
- Length
- 504 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Oxalyl CoA-synthetase
- Ligands
- AMP
- Pockets
- 5 · best druggability 0.80
Structure
x-ray diffraction · 1 distinct chain · 32% helix, 27% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Oxalyl CoA-synthetase | protein | 504 | 32% helix, 27% strand | — |
Ligands and binding sites
- AMP · Adenosine monophosphate · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
5 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 879 | 0.80 | 0.82 | 101 | AMP |
| 2 | 50 | 0.69 | 0.97 | 13 | empty |
| 3 | 122 | 0.47 | 0.78 | 14 | empty |
| 4 | 93 | 0.40 | 0.77 | 23 | empty |
| 5 | 78 | 0.29 | 0.73 | 15 | empty |
Compared structures
- 6QJZ · Identificationand Characterization of an Oxalylfrom Grass pea (Lathyrus… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 6QJZ · PDBe 6QJZ
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