Research workbench
Thermophage P23-45 in situ procapsid portal protein
Analyse Thermophage P23-45 in situ procapsid portal protein in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6QJT
- Type
- protein
- Length
- 411 residues
- Chains
- 1
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Portal protein
- UniProt
- A7XXB9
- Pockets
- 4 · best druggability 0.67
Structure
electron microscopy · 1 distinct chain · 41% helix, 13% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Portal protein | protein | 411 | 41% helix, 13% strand | A7XXB9 |
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 309 | 0.67 | 0.82 | 26 | empty |
| 2 | 79 | 0.31 | 0.74 | 15 | empty |
| 3 | 53 | 0.29 | 0.75 | 11 | empty |
| 4 | 51 | 0.26 | 0.73 | 12 | empty |
Compared structures
- 6QJT · Thermophage P23-45 in situ procapsid portal protein · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A7XXB9
- Elsewhere: RCSB PDB 6QJT · PDBe 6QJT · UniProt A7XXB9
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