Research workbench
Tina-conjugated antiparallel DNA triplex
Analyse Tina-conjugated antiparallel DNA triplex in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6QHI
- Type
- DNA
- Length
- 22 nucleotides
- Chains
- 3
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- DNA (5'-D(*(DT5)P*CP*CP*TP*CP*CP*(DT3)*(DA5) P*GP*GP*AP*GP*GP*(DA3)*(DT5)P*GP*GP*TP*GP*(TI…
Structure
solution nmr · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| B | DNA (5'-D(*(DT5)P*CP*CP*TP*CP*CP*(DT3)*(DA5) P*GP*GP*AP*GP*GP*(DA3)*(DT5)P*GP*GP*TP*GP*(TIN)P*GP*(DT3))-3') | dna | 7 | — | — |
| C | DNA (5'-D(*(DT5)P*CP*CP*TP*CP*CP*(DT3)*(DA5) P*GP*GP*AP*GP*GP*(DA3)*(DT5)P*GP*GP*TP*GP*(TIN)P*GP*(DT3))-3') | dna | 7 | — | — |
| A | DNA (5'-D(*(DT5)P*CP*CP*TP*CP*CP*(DT3)*(DA5) P*GP*GP*AP*GP*GP*(DA3)*(DT5)P*GP*GP*TP*GP*(TIN)P*GP*(DT3))-3') | dna | 8 | — | — |
Interfaces
3 interfaces between chains.
- C–A · 444 Ų buried · 24 hydrogen bonds · nucleic-nucleic
- B–C · 328 Ų buried · 35 hydrogen bonds · nucleic-nucleic
- B–A · 233 Ų buried · 0 hydrogen bonds · nucleic-nucleic
Modifications
Observed in the structure: 1 modified (nucleotide modification).
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 6QHI · PDBe 6QHI
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