Research workbench
IMP1 KH1 and KH2 domains create a structural platform with unique RNA recognition and re-modelling properties
Analyse IMP1 KH1 and KH2 domains create a structural platform with unique RNA… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6QEY
- Type
- protein
- Length
- 170 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Insulin-like growth factor 2 mRNA-binding protein 1
- UniProt
- Q9NZI8
- Ligands
- CCN, PO4
- Pockets
- 1 · best druggability 0.27
Structure
x-ray diffraction · 1 distinct chain · 56% helix, 22% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Insulin-like growth factor 2 mRNA-binding protein 1 | protein | 170 | 56% helix, 22% strand | Q9NZI8 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 53 | 0.27 | 0.74 | 22 | empty |
Compared structures
- 6QEY · IMP1 KH1 and KH2 domains create a structural platform with unique RNA recognition and… · the same entry in another collection · chain A against A, TM-score 1.00
- Q9NZI8 · AlphaFold monomer V2.0 prediction for insulin-like growth factor 2 mRNA-binding protein 1… · a predicted model of the same protein · chain A against A, TM-score 0.93
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9NZI8
- Elsewhere: RCSB PDB 6QEY · PDBe 6QEY · UniProt Q9NZI8
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