Research workbench
Putative membrane tansporter, magnetosome protein mamm ctd [desulfamplus magnetovallimortis bw-1]
Analyse Putative membrane tansporter, magnetosome protein mamm ctd [desulfamplus… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6QEK
- Type
- protein
- Length
- 155 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Magnetosome protein
- UniProt
- G8IQT5
- Pockets
- 2 · best druggability 0.37
Structure
x-ray diffraction · 2 distinct chains · 34% helix, 39% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Magnetosome protein | protein | 78 | 36% helix, 38% strand | G8IQT5 |
| B | Magnetosome protein | protein | 77 | 32% helix, 39% strand | G8IQT5 |
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 59 | 0.37 | 0.79 | 15 | empty |
| 2 | 60 | 0.26 | 0.73 | 15 | empty |
Interfaces
1 interface between chains.
- A–B · 578 Ų buried · 18 hydrogen bonds · protein-protein
Compared structures
- 6QEK · Putative membrane tansporter, magnetosome protein MamM CTD [Desulfamplus… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt G8IQT5
- Elsewhere: RCSB PDB 6QEK · PDBe 6QEK · UniProt G8IQT5
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