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Cryo-EM atomic structure of broad bean stain virus (bbsv)

Analyse Cryo-EM atomic structure of broad bean stain virus (bbsv) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6QCC
Type: protein
Length: 552 residues
Chains: 2
Method: electron microscopy
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Large coat-protein subunit; Small coat-protein subunit
UniProt: D0PSV7
Pockets: 5 · best druggability 0.58

Structure

electron microscopy · 2 distinct chains · 7% helix, 41% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Large coat-protein subunit	protein	370	8% helix, 38% strand	D0PSV7
B	Small coat-protein subunit	protein	182	5% helix, 48% strand	D0PSV7

Pockets

5 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	275	0.58	0.78	34	empty
2	146	0.56	0.82	33	empty
3	130	0.55	0.82	18	empty
4	90	0.35	0.75	19	empty
5	57	0.29	0.75	15	empty

Interfaces

1 interface between chains.

A–B · 1821 Å² buried · 17 hydrogen bonds · protein-protein

Compared structures

6QCC · Cryo-EM Atomic Structure of Broad Bean Stain Virus (BBSV) · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt D0PSV7
Elsewhere: RCSB PDB 6QCC · PDBe 6QCC · UniProt D0PSV7

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