Research workbench
The structure of GH26C from muricauda sp. MAR_2010_75
Analyse The structure of GH26C from muricauda sp. MAR_2010_75 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6Q78
- Type
- protein
- Length
- 748 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- GH26C
- EC
- 3.2.1.78
- Pockets
- 4 · best druggability 0.60
Structure
x-ray diffraction · 1 distinct chain · 39% helix, 15% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | GH26C (EC 3.2.1.78) | protein | 374 | 39% helix, 15% strand | — |
Ligands and binding sites
- TRS · 2-amino-2-hydroxymethyl-propane-1,3-diol · additive · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 383 | 0.60 | 0.76 | 50 | TRS |
| 2 | 376 | 0.58 | 0.76 | 52 | TRS |
| 3 | 190 | 0.52 | 0.78 | 34 | empty |
| 4 | 156 | 0.50 | 0.78 | 29 | empty |
Interfaces
1 interface between chains.
- A–B · 572 Ų buried · 16 hydrogen bonds · protein-protein
Compared structures
- 6Q78 · The structure of GH26C from Muricauda sp. MAR_2010_75 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 6Q78 · PDBe 6Q78
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.