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The ABC transporter associated binding protein from B. animalis subsp. lactis bl-04 without ligand. semet variant
Analyse The ABC transporter associated binding protein from B. animalis subsp. lactis… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6Q5G
- Type
- protein
- Length
- 832 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Sugar ABC transporter substrate-binding protein
- UniProt
- A0A386JXS7
- Pockets
- 8 · best druggability 0.75
Structure
x-ray diffraction · 2 distinct chains · 44% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Sugar ABC transporter substrate-binding protein | protein | 416 | 44% helix, 17% strand | A0A386JXS7 |
| B | Sugar ABC transporter substrate-binding protein | protein | 416 | 45% helix, 17% strand | A0A386JXS7 |
Pockets
8 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 754 | 0.75 | 0.80 | 70 | empty |
| 2 | 734 | 0.74 | 0.79 | 70 | empty |
| 3 | 221 | 0.67 | 0.85 | 35 | empty |
| 4 | 189 | 0.55 | 0.79 | 32 | empty |
| 5 | 205 | 0.49 | 0.76 | 25 | empty |
Interfaces
1 interface between chains.
- A–B · 424 Ų buried · 7 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 12 modified (engineered).
Compared structures
- 6Q5G · The ABC transporter associated binding protein from B. animalis subsp. lactis Bl-04… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A386JXS7
- Elsewhere: RCSB PDB 6Q5G · PDBe 6Q5G · UniProt A0A386JXS7
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