Research workbench
Structure of the parallel-stranded DNA quadruplex D(TTAGGGA)4 containing the human telomeric repeat
Analyse Structure of the parallel-stranded DNA quadruplex D(TTAGGGA)4 containing the… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1NP9
- Type
- DNA
- Length
- 28 nucleotides
- Chains
- 4
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 5'-D(*TP*TP*AP*GP*GP*GP*T)-3'
Structure
solution nmr · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D | 5'-D(*TP*TP*AP*GP*GP*GP*T)-3' | dna | 7 | — | — |
Interfaces
6 interfaces between chains.
- B–C · 374 Ų buried · 22 hydrogen bonds · nucleic-nucleic
- A–D · 372 Ų buried · 22 hydrogen bonds · nucleic-nucleic
- C–D · 327 Ų buried · 21 hydrogen bonds · nucleic-nucleic
- A–B · 265 Ų buried · 17 hydrogen bonds · nucleic-nucleic
- A–C · 163 Ų buried · 1 hydrogen bond · nucleic-nucleic
Compared structures
- 1NP9 · Structure of the parallel-stranded DNA quadruplex d(TTAGGGA)4 containing the human… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 1NP9 · PDBe 1NP9
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