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Apo yfea extracted from the E. COLI periplasm

Analyse Apo yfea extracted from the E. COLI periplasm in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6Q1C
Type: protein
Length: 259 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Periplasmic chelated iron-binding protein yfea
UniProt: Q56952
Pockets: 1 · best druggability 0.44

Structure

x-ray diffraction · 1 distinct chain · 47% helix, 15% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Periplasmic chelated iron-binding protein yfea	protein	259	47% helix, 15% strand	Q56952

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	59	0.44	0.83	17	empty

Compared structures

6Q1C · Apo YfeA extracted from the E. coli periplasm · the same entry in another collection · chain A against A, TM-score 1.00
Q56952 · AlphaFold monomer V2.0 prediction for periplasmic chelated iron- binding protein yfea… · a predicted model of the same protein · chain A against A, TM-score 0.95

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q56952
Elsewhere: RCSB PDB 6Q1C · PDBe 6Q1C · UniProt Q56952

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