Crystal structure of red kidney bean purple acid phosphatase in complex with adenosine diphosphate metavanadate

Structure

x-ray diffraction · 3 distinct chains.

Ligands and binding sites

• AD9 · Adp metavanadate · ligand · 2 copies · chains A, D, B, C
• P4J · [(2~{R},3~{R},4~{R},5~{S})-2-(5-azanylimidazol-1-yl)-4-[[bis(oxidanyl)-[tris(oxidanyl)vanadiooxy]vanadio]oxy-bis(oxidanyl)vanadio]oxy-5-[[bis(oxidanyl)-[tris(oxidanyl)vanadiooxy]vanadio]oxymethyl]oxolan-3-yl]oxy-tris(oxidanyl)vanadium · ligand · chains B
• NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 19 copies · chains A, B, D, C
• FUC · alpha-L-fucopyranose · sugar · 4 copies · chains C
• ZN · Zinc ion · metal · 4 copies · chains A, B, D, C
• FE · Fe (III) ion · metal · 4 copies · chains A, B, D, C
• NA · Sodium ion · metal · 3 copies · chains A, D
• SO4 · Sulfate ion · ion · 11 copies · chains A, B, D, C
• CL · Chloride ion · ion · chains B, C
• EDO · 1,2-ethanediol · additive · 32 copies · chains A, D, B, C
• GOL · Glycerol · additive · 13 copies · chains A, D, B, C
• PGE · Triethylene glycol · additive · 4 copies · chains A, B, C
• FLC · Citrate anion · additive · 2 copies · chains C

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

• 6PY9 · Crystal structure of red kidney bean purple acid phosphatase in complex with adenosine… · the same entry in another collection · chain A against A, TM-score 1.00
• P80366 · AlphaFold monomer V2.0 prediction for FE(3+)-ZN(2+) purple acid phosphatase (P80366) · a predicted model of the same protein · chain D against A, TM-score 1.00

Analyse

• Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
• Every structure of UniProt P80366
• Elsewhere: RCSB PDB 6PY9 · PDBe 6PY9 · UniProt P80366