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Horse spleen apoferritin light chain

Analyse Horse spleen apoferritin light chain in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6PXM
Type: protein
Length: 4,080 residues
Chains: 24
Method: electron microscopy
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Ferritin light chain
UniProt: P02791
Pockets: 20 · best druggability 0.81

Structure

electron microscopy · 1 distinct chain · 73% helix, 1% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
B, A, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, V, W, X, Y	Ferritin light chain	protein	170	73% helix, 1% strand	P02791

Pockets

20 pockets found on a 1 Å grid, 20 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	131	0.81	0.98	18	empty
2	125	0.81	0.98	18	empty
3	132	0.81	0.97	18	empty
4	132	0.81	0.97	18	empty
5	122	0.80	0.98	18	empty

Interfaces

72 interfaces between chains.

A–D · 1550 Å² buried · 24 hydrogen bonds · protein-protein
L–M · 1548 Å² buried · 24 hydrogen bonds · protein-protein
O–V · 1547 Å² buried · 24 hydrogen bonds · protein-protein
K–P · 1546 Å² buried · 24 hydrogen bonds · protein-protein
B–F · 1545 Å² buried · 24 hydrogen bonds · protein-protein

Compared structures

6PXM · Horse spleen apoferritin light chain · the same entry in another collection · chain J against J, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P02791
Elsewhere: RCSB PDB 6PXM · PDBe 6PXM · UniProt P02791

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