Research workbench
Influenza B M2 proton channel in the closed state - ssnmr structure at pH 7.5
Analyse Influenza B M2 proton channel in the closed state - ssnmr structure at pH 7.5 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6PVR
- Type
- protein
- Length
- 132 residues
- Chains
- 4
- Method
- solid-state nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- BM2 protein
- Pockets
- 3 · best druggability 0.78
Structure
solid-state nmr · 1 distinct chain · 70% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D | BM2 protein | protein | 33 | 70% helix, 0% strand | — |
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 753 | 0.78 | 0.82 | 49 | empty |
| 2 | 69 | 0.36 | 0.77 | 12 | empty |
| 3 | 54 | 0.34 | 0.77 | 11 | empty |
Interfaces
4 interfaces between chains.
- C–D · 328 Ų buried · 0 hydrogen bonds · protein-protein
- A–B · 315 Ų buried · 0 hydrogen bonds · protein-protein
- A–D · 307 Ų buried · 0 hydrogen bonds · protein-protein
- B–C · 299 Ų buried · 0 hydrogen bonds · protein-protein
Compared structures
- 6PVR · Influenza B M2 Proton Channel in the Closed State - SSNMR Structure at pH 7.5 · the same entry in another collection · chain B against B, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 6PVR · PDBe 6PVR
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.