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1.56 a crystal structure of flavodoxin-like domain of schizosaccharomyces japonicus putative trnaphe 4-demethylwyosine synthase TYW1 in complex with FMN

Analyse 1.56 a crystal structure of flavodoxin-like domain of schizosaccharomyces… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6PUQ
Type: protein
Length: 171 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Wybutosine biosynthesis protein TYW1
UniProt: B6K6D6
Ligands: FMN, MG
Pockets: 1 · best druggability 0.41

Structure

x-ray diffraction · 1 distinct chain · 44% helix, 19% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Wybutosine biosynthesis protein TYW1	protein	171	44% helix, 19% strand	B6K6D6

Ligands and binding sites

FMN · Flavin mononucleotide · ligand · chains A
MG · Magnesium ion · metal · 5 copies · chains A
PEG · Di(hydroxyethyl)ether · additive · chains A
ACT · Acetate ion · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	82	0.41	0.78	20	FMN, MG

Compared structures

6PUQ · 1.56 A crystal structure of flavodoxin-like domain of Schizosaccharomyces japonicus… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt B6K6D6
Elsewhere: RCSB PDB 6PUQ · PDBe 6PUQ · UniProt B6K6D6

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