Research workbench
Crystal structure of the pre-assembly scaffolding protein GP7 from the double-stranded DNA bacteriophage PHI29
Analyse Crystal structure of the pre-assembly scaffolding protein GP7 from the… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1NO4
- Type
- protein
- Length
- 298 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Head morphogenesis protein
- UniProt
- P13848
- Pockets
- 1 · best druggability 0.47
Structure
x-ray diffraction · 3 distinct chains · 87% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Head morphogenesis protein | protein | 77 | 88% helix, 0% strand | P13848 |
| B | Head morphogenesis protein | protein | 75 | 85% helix, 0% strand | P13848 |
| C, D | Head morphogenesis protein | protein | 73 | 88% helix, 0% strand | P13848 |
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 160 | 0.47 | 0.76 | 22 | empty |
Interfaces
5 interfaces between chains.
- A–B · 1942 Ų buried · 21 hydrogen bonds · protein-protein
- C–D · 1927 Ų buried · 22 hydrogen bonds · protein-protein
- B–D · 414 Ų buried · 5 hydrogen bonds · protein-protein
- A–D · 288 Ų buried · 2 hydrogen bonds · protein-protein
- A–C · 135 Ų buried · 3 hydrogen bonds · protein-protein
Compared structures
- 1NO4 · Crystal Structure of the pre-assembly scaffolding protein gp7 from the double-stranded… · the same entry in another collection · chain C against C, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P13848
- Elsewhere: RCSB PDB 1NO4 · PDBe 1NO4 · UniProt P13848
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