Research workbench
1.42 ångström resolution crystal structure of translocation protein tolb from salmonella enterica
Analyse 1.42 ångström resolution crystal structure of translocation protein tolb from… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6PNV
- Type
- protein
- Length
- 411 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Tol-pal system protein tolb
- UniProt
- A0A0D6H0D6
- Ligands
- K, NA
- Pockets
- 2 · best druggability 0.78
Structure
x-ray diffraction · 1 distinct chain · 9% helix, 45% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Tol-pal system protein tolb | protein | 411 | 9% helix, 45% strand | A0A0D6H0D6 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 556 | 0.78 | 0.84 | 58 | NA |
| 2 | 55 | 0.26 | 0.73 | 15 | empty |
Compared structures
- 6PNV · 1.42 Angstrom Resolution Crystal Structure of Translocation Protein TolB from Salmonella… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A0D6H0D6
- Elsewhere: RCSB PDB 6PNV · PDBe 6PNV · UniProt A0A0D6H0D6
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