Research workbench
Structure of sorbitol dehydrogenase from sinorhizobium meliloti 1021
Analyse Structure of sorbitol dehydrogenase from sinorhizobium meliloti 1021 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6PEI
- Type
- protein
- Length
- 1,024 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Sorbitol dehydrogenase (L-iditol 2-dehydrogenase)
- EC
- 1.1.1.14
- UniProt
- Q92N06
- Pockets
- 7 · best druggability 0.87
Structure
x-ray diffraction · 1 distinct chain · 51% helix, 16% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D | Sorbitol dehydrogenase (L-iditol 2-dehydrogenase) (EC 1.1.1.14) | protein | 256 | 51% helix, 16% strand | Q92N06 |
Pockets
7 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 664 | 0.87 | 0.91 | 46 | empty |
| 2 | 961 | 0.82 | 0.83 | 101 | empty |
| 3 | 816 | 0.81 | 0.84 | 88 | empty |
| 4 | 72 | 0.36 | 0.77 | 18 | empty |
| 5 | 65 | 0.33 | 0.76 | 17 | empty |
Interfaces
6 interfaces between chains.
- A–C · 1587 Ų buried · 27 hydrogen bonds · protein-protein
- B–D · 1583 Ų buried · 28 hydrogen bonds · protein-protein
- A–B · 1552 Ų buried · 34 hydrogen bonds · protein-protein
- C–D · 1508 Ų buried · 33 hydrogen bonds · protein-protein
- B–C · 137 Ų buried · 0 hydrogen bonds · protein-protein
Compared structures
- 6PEI · Structure of sorbitol dehydrogenase from Sinorhizobium meliloti 1021 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q92N06
- Elsewhere: RCSB PDB 6PEI · PDBe 6PEI · UniProt Q92N06
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