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The structure of SMLT3025, an immunity protein of the stenotrophomonas maltophilia type IV secretion system

Analyse The structure of SMLT3025, an immunity protein of the stenotrophomonas… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6PDK
Type: protein
Length: 248 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Uncharacterized protein
UniProt: B2FJJ6
Ligands: BR, CL
Pockets: 2 · best druggability 0.40

Structure

x-ray diffraction · 1 distinct chain · 24% helix, 34% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Uncharacterized protein	protein	248	24% helix, 34% strand	B2FJJ6

Ligands and binding sites

BR · Bromide ion · ion · 11 copies · chains A
CL · Chloride ion · ion · 4 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	124	0.40	0.75	25	BR
2	54	0.28	0.75	18	BR

Modifications

Observed in the structure: 1 disulfide (disulfide).

Compared structures

6PDK · The Structure of Smlt3025, an immunity protein of the Stenotrophomonas maltophilia type… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt B2FJJ6
Elsewhere: RCSB PDB 6PDK · PDBe 6PDK · UniProt B2FJJ6

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