Research workbench
VP8* of a G2P[4] human rotavirus in complex with scfv antibody 9
Analyse VP8* of a G2P[4] human rotavirus in complex with scfv antibody 9 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6PCU
- Type
- protein
- Length
- 1,191 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q2VE61
- Ligands
- SO4
Structure
x-ray diffraction · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 162 | — | Q2VE61 |
| B | — | protein | 235 | — | — |
| D, G | — | protein | 161 | — | Q2VE61 |
| E, H | — | protein | 236 | — | — |
Ligands and binding sites
- SO4 · Sulfate ion · ion · 6 copies · chains A, E, B, D, G
- GOL · Glycerol · additive · 4 copies · chains A, D, G
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6PCU · VP8* of a G2P[4] human rotavirus in complex with scFv antibody 9 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q2VE61
- Elsewhere: RCSB PDB 6PCU · PDBe 6PCU · UniProt Q2VE61
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