Research workbench
Bacteroides uniformis endo-laminarinase BUGH158 from the BETA(1,3)- glucan utilization locus
Analyse Bacteroides uniformis endo-laminarinase BUGH158 from the BETA(1,3)- glucan… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6PAL
- Type
- protein
- Length
- 803 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Uncharacterized protein
- UniProt
- A0A412SRH5
- Ligands
- SO4
- Pockets
- 5 · best druggability 0.77
Structure
x-ray diffraction · 2 distinct chains · 28% helix, 32% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Uncharacterized protein | protein | 404 | 27% helix, 32% strand | A0A412SRH5 |
| B | Uncharacterized protein | protein | 399 | 28% helix, 31% strand | A0A412SRH5 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
5 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1081 | 0.77 | 0.79 | 93 | ACT |
| 2 | 940 | 0.77 | 0.79 | 87 | ACT |
| 3 | 93 | 0.65 | 0.91 | 19 | empty |
| 4 | 65 | 0.34 | 0.77 | 16 | empty |
| 5 | 61 | 0.34 | 0.77 | 16 | empty |
Interfaces
1 interface between chains.
- A–B · 1620 Ų buried · 10 hydrogen bonds · protein-protein
Compared structures
- 6PAL · Bacteroides uniformis endo-laminarinase BuGH158 from the beta(1,3)-glucan utilization… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A412SRH5
- Elsewhere: RCSB PDB 6PAL · PDBe 6PAL · UniProt A0A412SRH5
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