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E.COLI lpxa in complex with udp-3-O-(R-3-hydroxymyristoyl)-glcnac and compound 8

Analyse E.COLI lpxa in complex with udp-3-O-(R-3-hydroxymyristoyl)-glcnac and compound 8 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6P9T
Type: protein
Length: 263 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Acyl-[acyl-carrier-protein]--udp-N-acetylglucosamine O- acyltransferase
EC: 2.3.1.129
UniProt: W9AB79
Ligands: U20, O5D, PO4

Structure

x-ray diffraction · 1 distinct chain · 17% helix, 30% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Acyl-[acyl-carrier-protein]--udp-N-acetylglucosamine O- acyltransferase (EC 2.3.1.129)	protein	263	17% helix, 30% strand	W9AB79

Ligands and binding sites

U20 · uridine-5'-diphosphate-3-O-(R-3-hydroxymyristoyl)-N-acetyl-D-glucosamine · ligand · chains A
O5D · [3-(5-amino-4-methylpyridin-2-yl)-1H-pyrazol-5-yl]{(3r)-3-[(2-chloro-6-methoxyphenyl) methyl]morpholin-4-yl}methanone · ligand · chains A
PO4 · Phosphate ion · ion · 2 copies · chains A
DMS · Dimethyl sulfoxide · additive · 3 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

6P9T · E.coli LpxA in complex with UDP-3-O-(R-3-hydroxymyristoyl)-GlcNAc and Compound 8 · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt W9AB79
Elsewhere: RCSB PDB 6P9T · PDBe 6P9T · UniProt W9AB79

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