Research workbench

BG505 sosip-I53-50NP

Analyse BG505 sosip-I53-50NP in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6P6F
Type: protein
Length: 351 residues
Chains: 2
Method: electron microscopy
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: I53-50A.1NT1; I53-50B.4PT1
Pockets: 3 · best druggability 0.37

Structure

electron microscopy · 2 distinct chains · 50% helix, 18% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	I53-50A.1NT1	protein	201	49% helix, 17% strand	—
B	I53-50B.4PT1	protein	150	52% helix, 19% strand	—

Pockets

3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	84	0.37	0.76	16	empty
2	99	0.36	0.75	20	empty
3	93	0.35	0.74	15	empty

Interfaces

1 interface between chains.

A–B · 579 Å² buried · 2 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 1 disulfide (disulfide).

Compared structures

6P6F · BG505 sosip-I53-50NP · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 6P6F · PDBe 6P6F

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