Research workbench
Cu-bound pcuac domain from PMOF1
Analyse Cu-bound pcuac domain from PMOF1 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6P16
- Type
- protein
- Length
- 240 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- PMOF1
- Ligands
- CU
- Pockets
- 2 · best druggability 0.40
Structure
x-ray diffraction · 1 distinct chain · 0% helix, 58% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| B, A | PMOF1 | protein | 120 | 0% helix, 58% strand | — |
Ligands and binding sites
- CU · Copper (II) ion · metal · 2 copies · chains B, A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 135 | 0.40 | 0.74 | 25 | empty |
| 2 | 105 | 0.36 | 0.74 | 20 | empty |
Interfaces
1 interface between chains.
- B–A · 580 Ų buried · 10 hydrogen bonds · protein-protein
Compared structures
- 6P16 · Cu-bound PCuAC domain from PmoF1 · the same entry in another collection · chain B against B, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 6P16 · PDBe 6P16
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