Research workbench
Crystal structure of the complex between the type VI effector TAS1 and its immunity protein
Analyse Crystal structure of the complex between the type VI effector TAS1 and its… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6OX6
- Type
- protein
- Length
- 270 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- TAS1; PA14_01140
- UniProt
- A0A232D9K2, A0A090A233
- Pockets
- 3 · best druggability 0.69
Structure
x-ray diffraction · 2 distinct chains · 46% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | TAS1 | protein | 194 | 52% helix, 15% strand | A0A232D9K2 |
| B | PA14_01140 | protein | 76 | 30% helix, 28% strand | A0A090A233 |
Ligands and binding sites
- ACT · Acetate ion · additive · 7 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 404 | 0.69 | 0.81 | 47 | ACT |
| 2 | 120 | 0.42 | 0.76 | 23 | empty |
| 3 | 55 | 0.24 | 0.72 | 15 | empty |
Interfaces
1 interface between chains.
- A–B · 1376 Ų buried · 27 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 4 modified (engineered).
Compared structures
- 6OX6 · Crystal structure of the complex between the Type VI effector Tas1 and its immunity… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A232D9K2
- Every structure of UniProt A0A090A233
- Elsewhere: RCSB PDB 6OX6 · PDBe 6OX6 · UniProt A0A232D9K2 · UniProt A0A090A233
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