Research workbench

Sterol carrier protein 2 from yarrowia lipolytica (apo form)

Analyse Sterol carrier protein 2 from yarrowia lipolytica (apo form) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6OVP
Type: protein
Length: 246 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Fatty acid-binding protein
UniProt: P80547
Ligands: PO4
Pockets: 1 · best druggability 0.72

Structure

x-ray diffraction · 2 distinct chains · 42% helix, 24% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Fatty acid-binding protein	protein	118	40% helix, 25% strand	P80547
B	Fatty acid-binding protein	protein	128	45% helix, 23% strand	P80547

Ligands and binding sites

PO4 · Phosphate ion · ion · chains B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	560	0.72	0.80	53	empty

Interfaces

1 interface between chains.

A–B · 710 Å² buried · 5 hydrogen bonds · protein-protein

Compared structures

6OVP · Sterol Carrier Protein 2 from Yarrowia Lipolytica (apo form) · the same entry in another collection · chain A against A, TM-score 1.00
P80547 · AlphaFold monomer V2.0 prediction for fatty acid-binding protein (P80547) · a predicted model of the same protein · chain A against A, TM-score 0.97

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P80547
Elsewhere: RCSB PDB 6OVP · PDBe 6OVP · UniProt P80547

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