Research workbench
Crystal structure of a bacillus thuringiensis CRY1DA tryptic core variant
Analyse Crystal structure of a bacillus thuringiensis CRY1DA tryptic core variant in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6OVB
- Type
- protein
- Length
- 566 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Active core crystal toxin protein 1D
- UniProt
- I3RS06
- Pockets
- 6 · best druggability 0.75
Structure
x-ray diffraction · 1 distinct chain · 37% helix, 30% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Active core crystal toxin protein 1D | protein | 566 | 37% helix, 30% strand | I3RS06 |
Pockets
6 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 313 | 0.75 | 0.87 | 38 | empty |
| 2 | 210 | 0.57 | 0.80 | 32 | empty |
| 3 | 206 | 0.50 | 0.77 | 36 | empty |
| 4 | 106 | 0.49 | 0.81 | 19 | empty |
| 5 | 87 | 0.36 | 0.76 | 19 | empty |
Compared structures
- 6OVB · Crystal structure of a Bacillus thuringiensis Cry1Da tryptic core variant · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt I3RS06
- Elsewhere: RCSB PDB 6OVB · PDBe 6OVB · UniProt I3RS06
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