Research workbench
Structure of the pterocarpan synthase dirigent protein GEPTS1
Analyse Structure of the pterocarpan synthase dirigent protein GEPTS1 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6OOC
- Type
- protein
- Length
- 1,009 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Dirigent protein
- UniProt
- A0A1V1FH01
- Pockets
- 19 · best druggability 0.79
Structure
x-ray diffraction · 6 distinct chains · 5% helix, 53% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Dirigent protein | protein | 161 | 4% helix, 56% strand | A0A1V1FH01 |
| B | Dirigent protein | protein | 174 | 3% helix, 49% strand | A0A1V1FH01 |
| C | Dirigent protein | protein | 164 | 4% helix, 54% strand | A0A1V1FH01 |
| D | Dirigent protein | protein | 168 | 5% helix, 52% strand | A0A1V1FH01 |
| E | Dirigent protein | protein | 168 | 4% helix, 58% strand | A0A1V1FH01 |
| F | Dirigent protein | protein | 174 | 8% helix, 49% strand | A0A1V1FH01 |
Pockets
19 pockets found on a 1 Å grid, 10 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 841 | 0.79 | 0.82 | 104 | empty |
| 2 | 197 | 0.77 | 0.91 | 33 | empty |
| 3 | 141 | 0.75 | 0.94 | 31 | empty |
| 4 | 195 | 0.75 | 0.90 | 35 | empty |
| 5 | 73 | 0.73 | 0.96 | 21 | empty |
Interfaces
10 interfaces between chains.
- A–B · 1971 Ų buried · 15 hydrogen bonds · protein-protein
- D–E · 1609 Ų buried · 22 hydrogen bonds · protein-protein
- B–C · 1574 Ų buried · 23 hydrogen bonds · protein-protein
- A–C · 1416 Ų buried · 18 hydrogen bonds · protein-protein
- D–F · 1275 Ų buried · 16 hydrogen bonds · protein-protein
Compared structures
- 6OOC · Structure of the pterocarpan synthase dirigent protein GePTS1 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A1V1FH01
- Elsewhere: RCSB PDB 6OOC · PDBe 6OOC · UniProt A0A1V1FH01
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