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Crystal structure of desulfovibrio vulgaris carbon monoxide dehydrogenase produced without cooc, as-isolated

Analyse Crystal structure of desulfovibrio vulgaris carbon monoxide dehydrogenase… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6ONC
Type: protein
Length: 2,503 residues
Chains: 4
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: Q72A99
Ligands: SF4, XCC, FES, MG, FE, CL

Structure

x-ray diffraction · 3 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	protein	625	—	Q72A99
B, C	—	protein	626	—	Q72A99
D	—	protein	626	—	Q72A99

Ligands and binding sites

SF4 · Iron/sulfur cluster · ligand · 4 copies · chains A, B, C, D
XCC · FE(4)-NI(1)-S(4) cluster · ligand · 4 copies · chains A, B, C, D
FES · Fe2/s2 (inorganic) cluster · ligand · 2 copies · chains A, B, C, D
MG · Magnesium ion · metal · 8 copies · chains B, D
FE · Fe (III) ion · metal · 4 copies · chains A, B, C, D
CL · Chloride ion · ion · 2 copies · chains B, C
GOL · Glycerol · additive · 3 copies · chains A, B, C, D

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

6ONC · Crystal structure of Desulfovibrio vulgaris carbon monoxide dehydrogenase produced… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

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Every structure of UniProt Q72A99
Elsewhere: RCSB PDB 6ONC · PDBe 6ONC · UniProt Q72A99

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