Research workbench
Cryoem structure of pilb from geobacter metallireducens: C2CCOCCO conformation
Analyse Cryoem structure of pilb from geobacter metallireducens: C2CCOCCO conformation in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6OLJ
- Type
- protein
- Length
- 2,322 residues
- Chains
- 6
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Type IV pilus biogenesis ATPase pilb
- UniProt
- Q39VU7
- Pockets
- 20 · best druggability 0.84
Structure
electron microscopy · 1 distinct chain · 39% helix, 26% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| C, A, B, D, E, F | Type IV pilus biogenesis ATPase pilb | protein | 387 | 39% helix, 26% strand | Q39VU7 |
Pockets
20 pockets found on a 1 Å grid, 20 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 990 | 0.84 | 0.85 | 151 | empty |
| 2 | 843 | 0.83 | 0.86 | 120 | empty |
| 3 | 1094 | 0.83 | 0.84 | 152 | empty |
| 4 | 989 | 0.83 | 0.84 | 154 | empty |
| 5 | 1018 | 0.82 | 0.84 | 153 | empty |
Interfaces
6 interfaces between chains.
- A–B · 550 Ų buried · 3 hydrogen bonds · protein-protein
- D–E · 498 Ų buried · 2 hydrogen bonds · protein-protein
- A–F · 491 Ų buried · 5 hydrogen bonds · protein-protein
- C–B · 460 Ų buried · 3 hydrogen bonds · protein-protein
- C–D · 450 Ų buried · 3 hydrogen bonds · protein-protein
Compared structures
- 6OLJ · CryoEM structure of PilB from Geobacter metallireducens: C2ccocco conformation · the same entry in another collection · chain C against C, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q39VU7
- Elsewhere: RCSB PDB 6OLJ · PDBe 6OLJ · UniProt Q39VU7
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