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Crystal structure of glyceraldehyde-3-phosphate dehydrogenase (GAPDH) from chlamydia trachomatis with bound NAD

Analyse Crystal structure of glyceraldehyde-3-phosphate dehydrogenase (GAPDH) from… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6OK4
Type: protein
Length: 1,335 residues
Chains: 4
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: P0CE13
Ligands: NAD, PO4, CL

Structure

x-ray diffraction · 2 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, C, D	—	protein	334	—	P0CE13
B	—	protein	333	—	P0CE13

Ligands and binding sites

NAD · Nicotinamide-adenine-dinucleotide · ligand · 4 copies · chains A, C, B, D
PO4 · Phosphate ion · ion · 6 copies · chains A, B, C, D
CL · Chloride ion · ion · chains A
EDO · 1,2-ethanediol · additive · 15 copies · chains A, B, D, C
PEG · Di(hydroxyethyl)ether · additive · 4 copies · chains A, B, C, D

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

6OK4 · Crystal Structure of Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) from Chlamydia… · the same entry in another collection · chain D against D, TM-score 1.00
P0CE13 · AlphaFold monomer V2.0 prediction for glyceraldehyde-3-phosphate dehydrogenase (P0CE13) · a predicted model of the same protein · chain B against A, TM-score 0.99

Analyse

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Every structure of UniProt P0CE13
Elsewhere: RCSB PDB 6OK4 · PDBe 6OK4 · UniProt P0CE13

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