Research workbench

Structure of YEPL2A K291W in complex with tetragalacturonic acid

Analyse Structure of YEPL2A K291W in complex with tetragalacturonic acid in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6OJK
Type: protein
Length: 542 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Periplasmic pectate lyase
UniProt: A0A0T9S209
Ligands: ADA
Pockets: 4 · best druggability 0.69

Structure

x-ray diffraction · 1 distinct chain · 45% helix, 14% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Periplasmic pectate lyase	protein	542	45% helix, 14% strand	A0A0T9S209

Ligands and binding sites

ADA · alpha-D-galactopyranuronic acid · sugar · 4 copies · chains A
EDO · 1,2-ethanediol · additive · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	742	0.69	0.76	71	ADA
2	283	0.64	0.81	28	empty
3	128	0.48	0.79	19	empty
4	55	0.44	0.83	16	empty

Compared structures

6OJK · Structure of YePL2A K291W in Complex with Tetragalacturonic Acid · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0A0T9S209
Elsewhere: RCSB PDB 6OJK · PDBe 6OJK · UniProt A0A0T9S209

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.