Research workbench
Crystal structure of fusobacterium nucleatum flavodoxin mutant K13G bound to flavin mononucleotide
Analyse Crystal structure of fusobacterium nucleatum flavodoxin mutant K13G bound to… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6OHK
- Type
- protein
- Length
- 170 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Flavodoxin
- UniProt
- Q8RFH4
- Ligands
- FMN
- Pockets
- 2 · best druggability 0.42
Structure
x-ray diffraction · 1 distinct chain · 34% helix, 22% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Flavodoxin | protein | 170 | 34% helix, 22% strand | Q8RFH4 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 81 | 0.42 | 0.79 | 23 | FMN |
| 2 | 53 | 0.27 | 0.74 | 13 | empty |
Compared structures
- 6OHK · Crystal structure of Fusobacterium nucleatum flavodoxin mutant K13G bound to flavin… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8RFH4
- Elsewhere: RCSB PDB 6OHK · PDBe 6OHK · UniProt Q8RFH4
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