Research workbench
Structure of salmonella type III secretion system needle filament
Analyse Structure of salmonella type III secretion system needle filament in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6OFH
- Type
- protein
- Length
- 1,482 residues
- Chains
- 19
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Protein prgi
- UniProt
- A0A0H3NF82
- Pockets
- 20 · best druggability 0.60
Structure
electron microscopy · 1 distinct chain · 77% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| D, U, V, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T | Protein prgi | protein | 78 | 77% helix, 0% strand | A0A0H3NF82 |
Pockets
20 pockets found on a 1 Å grid, 6 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 494 | 0.60 | 0.74 | 49 | empty |
| 2 | 325 | 0.56 | 0.76 | 38 | empty |
| 3 | 332 | 0.55 | 0.75 | 40 | empty |
| 4 | 221 | 0.53 | 0.77 | 39 | empty |
| 5 | 215 | 0.51 | 0.76 | 20 | empty |
Interfaces
53 interfaces between chains.
- V–J · 918 Ų buried · 12 hydrogen bonds · protein-protein
- G–M · 909 Ų buried · 14 hydrogen bonds · protein-protein
- I–O · 906 Ų buried · 12 hydrogen bonds · protein-protein
- H–N · 904 Ų buried · 15 hydrogen bonds · protein-protein
- L–R · 899 Ų buried · 13 hydrogen bonds · protein-protein
Compared structures
- 6OFH · Structure of Salmonella type III secretion system needle filament · the same entry in another collection · chain D against D, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A0H3NF82
- Elsewhere: RCSB PDB 6OFH · PDBe 6OFH · UniProt A0A0H3NF82
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