Research workbench
High-resolution filamentous structures of in vitro polymerized prgi needle
Analyse High-resolution filamentous structures of in vitro polymerized prgi needle in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6OFF
- Type
- protein
- Length
- 1,404 residues
- Chains
- 18
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Protein prgi
- UniProt
- A0A0H3NF82
- Pockets
- 20 · best druggability 0.68
Structure
electron microscopy · 1 distinct chain · 83% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R | Protein prgi | protein | 78 | 83% helix, 0% strand | A0A0H3NF82 |
Pockets
20 pockets found on a 1 Å grid, 6 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 861 | 0.68 | 0.75 | 112 | empty |
| 2 | 270 | 0.53 | 0.75 | 28 | empty |
| 3 | 273 | 0.52 | 0.75 | 34 | empty |
| 4 | 247 | 0.52 | 0.75 | 29 | empty |
| 5 | 243 | 0.51 | 0.75 | 27 | empty |
Interfaces
49 interfaces between chains.
- A–G · 884 Ų buried · 15 hydrogen bonds · protein-protein
- F–L · 880 Ų buried · 20 hydrogen bonds · protein-protein
- C–I · 866 Ų buried · 19 hydrogen bonds · protein-protein
- E–K · 864 Ų buried · 20 hydrogen bonds · protein-protein
- K–R · 863 Ų buried · 17 hydrogen bonds · protein-protein
Compared structures
- 6OFF · High-resolution filamentous structures of in vitro polymerized PrgI needle · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A0H3NF82
- Elsewhere: RCSB PDB 6OFF · PDBe 6OFF · UniProt A0A0H3NF82
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