Research workbench
Helical reconstruction of type III secretion system needle filament mutant-prgi S49A
Analyse Helical reconstruction of type III secretion system needle filament mutant-prgi… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6OFE
- Type
- protein
- Length
- 1,560 residues
- Chains
- 20
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Protein prgi
- UniProt
- A0A0H3NF82
- Pockets
- 20 · best druggability 0.65
Structure
electron microscopy · 1 distinct chain · 78% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| P, Q, R, S, T, K, L, M, N, O, F, G, H, I, J, D, A, B, C, E | Protein prgi | protein | 78 | 78% helix, 0% strand | A0A0H3NF82 |
Pockets
20 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 715 | 0.65 | 0.74 | 75 | empty |
| 2 | 325 | 0.53 | 0.75 | 37 | empty |
| 3 | 334 | 0.53 | 0.74 | 40 | empty |
| 4 | 233 | 0.51 | 0.75 | 22 | empty |
| 5 | 211 | 0.50 | 0.76 | 25 | empty |
Interfaces
57 interfaces between chains.
- J–D · 888 Ų buried · 15 hydrogen bonds · protein-protein
- G–E · 888 Ų buried · 15 hydrogen bonds · protein-protein
- H–C · 887 Ų buried · 13 hydrogen bonds · protein-protein
- N–H · 886 Ų buried · 15 hydrogen bonds · protein-protein
- O–I · 886 Ų buried · 15 hydrogen bonds · protein-protein
Compared structures
- 6OFE · Helical reconstruction of Type III Secretion System Needle filament mutant-PrgI S49A · the same entry in another collection · chain P against P, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A0H3NF82
- Elsewhere: RCSB PDB 6OFE · PDBe 6OFE · UniProt A0A0H3NF82
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