Research workbench
Crystal structure of a deacylation-defective mutant of penicillin- binding protein 5 at 1.9 a resolution
Analyse Crystal structure of a deacylation-defective mutant of penicillin- binding… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1NJ4
- Type
- protein
- Length
- 343 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Penicillin-binding protein 5
- EC
- 3.4.16.4
- UniProt
- P04287
- Pockets
- 3 · best druggability 0.49
Structure
x-ray diffraction · 1 distinct chain · 29% helix, 34% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Penicillin-binding protein 5 (EC 3.4.16.4) | protein | 343 | 29% helix, 34% strand | P04287 |
Pockets
3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 193 | 0.49 | 0.76 | 33 | empty |
| 2 | 106 | 0.36 | 0.73 | 23 | empty |
| 3 | 54 | 0.28 | 0.75 | 14 | empty |
Compared structures
- 1NJ4 · Crystal structure of a deacylation-defective mutant of penicillin-binding protein 5 at… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P04287
- Elsewhere: RCSB PDB 1NJ4 · PDBe 1NJ4 · UniProt P04287
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