Research workbench

Polyala model of omcc I-layer

Analyse Polyala model of omcc I-layer in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6OEH
Type: protein
Length: 6,580 residues
Chains: 14
Method: electron microscopy
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Polyala model of omcc I-layer
Pockets: 20 · best druggability 0.75

Structure

electron microscopy · 1 distinct chain · 69% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B, C, D, E, F, G, H, I, J, K, L, M, N	Polyala model of omcc I-layer	protein	470	69% helix, 0% strand	—

Pockets

20 pockets found on a 1 Å grid, 20 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	1107	0.75	0.78	116	empty
2	1054	0.75	0.78	115	empty
3	1078	0.75	0.77	115	empty
4	1068	0.75	0.77	112	empty
5	1027	0.74	0.77	115	empty

Interfaces

14 interfaces between chains.

A–B · 16 Å² buried · 0 hydrogen bonds · protein-protein
J–K · 16 Å² buried · 0 hydrogen bonds · protein-protein
H–I · 16 Å² buried · 0 hydrogen bonds · protein-protein
K–L · 15 Å² buried · 0 hydrogen bonds · protein-protein
M–N · 15 Å² buried · 0 hydrogen bonds · protein-protein

Compared structures

6OEH · PolyAla Model of OMCC I-Layer · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 6OEH · PDBe 6OEH

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