Research workbench
Structure of cagt from a cryo-EM reconstruction of a T4SS
Analyse Structure of cagt from a cryo-EM reconstruction of a T4SS in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6OEE
- Type
- protein
- Length
- 3,402 residues
- Chains
- 14
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Type IV secretion system apparatus protein cagt
- UniProt
- Q6VRP0
- Pockets
- 20 · best druggability 0.55
Structure
electron microscopy · 1 distinct chain · 39% helix, 10% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D, E, F, G, H, I, J, K, L, M, N | Type IV secretion system apparatus protein cagt | protein | 243 | 39% helix, 10% strand | Q6VRP0 |
Pockets
20 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 225 | 0.55 | 0.78 | 34 | empty |
| 2 | 145 | 0.52 | 0.80 | 18 | empty |
| 3 | 151 | 0.51 | 0.79 | 20 | empty |
| 4 | 192 | 0.50 | 0.77 | 30 | empty |
| 5 | 141 | 0.50 | 0.79 | 23 | empty |
Interfaces
14 interfaces between chains.
- M–N · 2112 Ų buried · 14 hydrogen bonds · protein-protein
- F–G · 2008 Ų buried · 9 hydrogen bonds · protein-protein
- B–C · 1986 Ų buried · 19 hydrogen bonds · protein-protein
- A–B · 1950 Ų buried · 6 hydrogen bonds · protein-protein
- D–E · 1920 Ų buried · 6 hydrogen bonds · protein-protein
Compared structures
- 6OEE · Structure of CagT from a cryo-EM reconstruction of a T4SS · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q6VRP0
- Elsewhere: RCSB PDB 6OEE · PDBe 6OEE · UniProt Q6VRP0
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