Research workbench
Structure of a uncharacterized protein from leptospira interrogans serogroup icterohaemorrhagiae serovar copenhageni (strain fiocruz L1- 130)
Analyse Structure of a uncharacterized protein from leptospira interrogans serogroup… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6OE6
- Type
- protein
- Length
- 237 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Uncharacterized protein
- UniProt
- Q72Q74
- Ligands
- NA
- Pockets
- 3 · best druggability 0.56
Structure
x-ray diffraction · 2 distinct chains · 3% helix, 53% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Uncharacterized protein | protein | 127 | 2% helix, 50% strand | Q72Q74 |
| B | Uncharacterized protein | protein | 110 | 3% helix, 57% strand | Q72Q74 |
Ligands and binding sites
- NA · Sodium ion · metal · 2 copies · chains A, B
- FMT · Formic acid · additive · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 299 | 0.56 | 0.76 | 30 | empty |
| 2 | 69 | 0.30 | 0.74 | 16 | empty |
| 3 | 58 | 0.30 | 0.75 | 14 | FMT |
Interfaces
1 interface between chains.
- A–B · 519 Ų buried · 4 hydrogen bonds · protein-protein
Compared structures
- 6OE6 · Structure of a Uncharacterized protein from Leptospira interrogans serogroup… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q72Q74
- Elsewhere: RCSB PDB 6OE6 · PDBe 6OE6 · UniProt Q72Q74
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