Research workbench
Solution structure of the H-nox protein from shewanella woodyi in the FE(II)CO ligation state
Analyse Solution structure of the H-nox protein from shewanella woodyi in the FE(II)CO… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6OCV
- Type
- protein
- Length
- 190 residues
- Chains
- 1
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Heme no binding domain protein
- UniProt
- B1KIH6
- Ligands
- HEM, CMO
- Pockets
- 3 · best druggability 0.79
Structure
solution nmr · 1 distinct chain · 51% helix, 15% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Heme no binding domain protein | protein | 190 | 51% helix, 15% strand | B1KIH6 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1194 | 0.79 | 0.80 | 77 | CMO, HEM |
| 2 | 101 | 0.58 | 0.86 | 22 | empty |
| 3 | 135 | 0.50 | 0.80 | 22 | empty |
Compared structures
- 6OCV · Solution structure of the H-NOX protein from Shewanella woodyi in the Fe(II)CO ligation… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B1KIH6
- Elsewhere: RCSB PDB 6OCV · PDBe 6OCV · UniProt B1KIH6
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.