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D-alanyl transferase dltd from enterococcus faecalis

Analyse D-alanyl transferase dltd from enterococcus faecalis in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6O93
Type: protein
Length: 394 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: D-alanyl transferase dltd
UniProt: Q830N3
Ligands: NA, PO4, CL
Pockets: 5 · best druggability 0.48

Structure

x-ray diffraction · 1 distinct chain · 54% helix, 7% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	D-alanyl transferase dltd	protein	394	54% helix, 7% strand	Q830N3

Ligands and binding sites

NA · Sodium ion · metal · chains A
PO4 · Phosphate ion · ion · 4 copies · chains A
CL · Chloride ion · ion · 3 copies · chains A
GOL · Glycerol · additive · 3 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

5 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	168	0.48	0.76	33	PO4, NA
2	97	0.40	0.76	12	empty
3	66	0.38	0.79	19	empty
4	115	0.37	0.74	19	empty
5	64	0.28	0.74	15	empty

Compared structures

6O93 · D-alanyl transferase DltD from Enterococcus faecalis · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q830N3
Elsewhere: RCSB PDB 6O93 · PDBe 6O93 · UniProt Q830N3

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