GL1X · GenesisL1 explorer

Research workbench

Crystal structure of CSM6 H132A mutant in complex with CA4 by cocrystallization of CA4 and CSM6 H132A mutant

Analyse Crystal structure of CSM6 H132A mutant in complex with CA4 by cocrystallization… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB
6O70
Type
protein
Length
865 residues
Chains
2
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule
CSM6
UniProt
B6YWC3
Ligands
ACK, LQJ
Pockets
9 · best druggability 0.87

Structure

x-ray diffraction · 2 distinct chains · 47% helix, 20% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
ACSM6protein43347% helix, 20% strandB6YWC3
BCSM6protein43247% helix, 21% strandB6YWC3

Ligands and binding sites

  • ACK · 2',3'- cyclic AMP · ligand · 2 copies · chains A, B
  • LQJ · 3'-O-[(R)-{[(2s,3as,4s,6s,6as)-6-(6-amino-9H-purin-9-yl)-2-hydroxy-2-oxotetrahydro-2H-2lambda~5~-furo[3,4-d][1,3,2]dioxaphosphol-4-yl]methoxy}(hydroxy) phosphoryl]adenosine · ligand · 2 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

9 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.

PocketVolume (ų)DruggabilityBuriednessLining residuesInside
110550.870.8880empty
210240.740.7776LQJ
33480.590.7641ACK
41410.450.7728empty
51370.410.7428empty

Interfaces

1 interface between chains.

  • A–B · 2316 Ų buried · 23 hydrogen bonds · protein-protein

Compared structures

  • 6O70 · Crystal structure of Csm6 H132A mutant in complex with cA4 by cocrystallization of cA4… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.