Research workbench
Crystal structure of apo CSM6
Analyse Crystal structure of apo CSM6 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6O6S
- Type
- protein
- Length
- 865 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- CSM6
- UniProt
- B6YWC3
- Pockets
- 9 · best druggability 0.87
Structure
x-ray diffraction · 2 distinct chains · 46% helix, 20% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | CSM6 | protein | 433 | 47% helix, 20% strand | B6YWC3 |
| B | CSM6 | protein | 432 | 45% helix, 20% strand | B6YWC3 |
Pockets
9 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1000 | 0.87 | 0.88 | 77 | empty |
| 2 | 1090 | 0.74 | 0.77 | 74 | empty |
| 3 | 345 | 0.60 | 0.77 | 41 | empty |
| 4 | 135 | 0.45 | 0.76 | 25 | empty |
| 5 | 107 | 0.41 | 0.77 | 26 | empty |
Interfaces
1 interface between chains.
- A–B · 2328 Ų buried · 21 hydrogen bonds · protein-protein
Compared structures
- 6O6S · Crystal structure of Apo Csm6 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B6YWC3
- Elsewhere: RCSB PDB 6O6S · PDBe 6O6S · UniProt B6YWC3
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