Research workbench
2.0 a structure of glycerol metabolism protein from E. COLI
Analyse 2.0 a structure of glycerol metabolism protein from E. COLI in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1NI9
- Type
- protein
- Length
- 291 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Protein glpx
- UniProt
- P0A9C9
- Ligands
- SO4
- Pockets
- 1 · best druggability 0.58
Structure
x-ray diffraction · 1 distinct chain · 31% helix, 32% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Protein glpx | protein | 291 | 31% helix, 32% strand | P0A9C9 |
Ligands and binding sites
- SO4 · Sulfate ion · ion · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 227 | 0.58 | 0.80 | 46 | empty |
Compared structures
- 1NI9 · 2.0 A structure of glycerol metabolism protein from E. coli · the same entry in another collection · chain A against A, TM-score 1.00
- P0A9C9 · AlphaFold monomer V2.0 prediction for fructose-1,6-bisphosphatase 1 class 2 (P0A9C9) · a predicted model of the same protein · chain A against A, TM-score 0.94
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0A9C9
- Elsewhere: RCSB PDB 1NI9 · PDBe 1NI9 · UniProt P0A9C9
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