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Crystal structure of the N-terminal domain of the a subunit of the bacillus megaterium spore germinant receptor GERK3
Analyse Crystal structure of the N-terminal domain of the a subunit of the bacillus… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6O59
- Type
- protein
- Length
- 381 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Germination protein
- UniProt
- O07504
- Pockets
- 3 · best druggability 0.66
Structure
x-ray diffraction · 2 distinct chains · 33% helix, 26% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Germination protein | protein | 255 | 32% helix, 26% strand | O07504 |
| B | Germination protein | protein | 126 | 34% helix, 26% strand | O07504 |
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 80 | 0.66 | 0.92 | 31 | empty |
| 2 | 68 | 0.39 | 0.79 | 17 | empty |
| 3 | 52 | 0.32 | 0.77 | 10 | empty |
Interfaces
1 interface between chains.
- A–B · 1768 Ų buried · 32 hydrogen bonds · protein-protein
Compared structures
- 6O59 · Crystal structure of the N-terminal domain of the A subunit of the Bacillus megaterium… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O07504
- Elsewhere: RCSB PDB 6O59 · PDBe 6O59 · UniProt O07504
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