Research workbench
Icosahedral reconstruction of the thermophilic bacteriophage P74-26 capsid
Analyse Icosahedral reconstruction of the thermophilic bacteriophage P74-26 capsid in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6O3H
- Type
- protein
- Length
- 3,878 residues
- Chains
- 14
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Major head protein; P74-26 head decoration protein
- UniProt
- A7XXR6, A7XXR5
- Pockets
- 20 · best druggability 0.75
Structure
electron microscopy · 2 distinct chains · 16% helix, 27% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D, E, F, G | Major head protein | protein | 409 | 19% helix, 27% strand | A7XXR6 |
| H, I, J, K, L, M, N | P74-26 head decoration protein | protein | 145 | 8% helix, 28% strand | A7XXR5 |
Pockets
20 pockets found on a 1 Å grid, 20 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1059 | 0.75 | 0.78 | 112 | empty |
| 2 | 585 | 0.70 | 0.79 | 59 | empty |
| 3 | 760 | 0.70 | 0.76 | 67 | empty |
| 4 | 491 | 0.69 | 0.79 | 64 | empty |
| 5 | 688 | 0.69 | 0.76 | 59 | empty |
Interfaces
35 interfaces between chains.
- D–E · 3376 Ų buried · 43 hydrogen bonds · protein-protein
- A–F · 3353 Ų buried · 41 hydrogen bonds · protein-protein
- B–C · 3350 Ų buried · 42 hydrogen bonds · protein-protein
- A–B · 3326 Ų buried · 37 hydrogen bonds · protein-protein
- C–D · 3293 Ų buried · 40 hydrogen bonds · protein-protein
Compared structures
- 6O3H · Icosahedral reconstruction of the thermophilic bacteriophage P74-26 capsid · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A7XXR6
- Every structure of UniProt A7XXR5
- Elsewhere: RCSB PDB 6O3H · PDBe 6O3H · UniProt A7XXR6 · UniProt A7XXR5
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