Research workbench
Lipid a transporter msba from salmonella typhimurium
Analyse Lipid a transporter msba from salmonella typhimurium in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6O30
- Type
- protein
- Length
- 1,150 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Lipid a export ATP-BINDING/PERMEASE protein msba
- EC
- 7.5.2.6
- UniProt
- A0A0K6RU95
- Pockets
- 10 · best druggability 0.70
Structure
x-ray diffraction · 1 distinct chain · 65% helix, 11% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Lipid a export ATP-BINDING/PERMEASE protein msba (EC 7.5.2.6) | protein | 575 | 65% helix, 11% strand | A0A0K6RU95 |
Pockets
10 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1096 | 0.70 | 0.74 | 82 | empty |
| 2 | 153 | 0.57 | 0.81 | 21 | empty |
| 3 | 156 | 0.57 | 0.81 | 26 | empty |
| 4 | 326 | 0.55 | 0.75 | 25 | empty |
| 5 | 193 | 0.53 | 0.78 | 24 | empty |
Interfaces
1 interface between chains.
- A–B · 607 Ų buried · 5 hydrogen bonds · protein-protein
Compared structures
- 6O30 · Lipid A transporter MsbA from Salmonella typhimurium · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A0K6RU95
- Elsewhere: RCSB PDB 6O30 · PDBe 6O30 · UniProt A0A0K6RU95
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