Research workbench
Drosophila melanogaster cenp-C cupin domain
Analyse Drosophila melanogaster cenp-C cupin domain in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6O2K
- Type
- protein
- Length
- 275 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Centromeric protein-C, isoform a
- UniProt
- Q9VHP9
- Pockets
- 1 · best druggability 0.76
Structure
x-ray diffraction · 2 distinct chains · 13% helix, 42% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Centromeric protein-C, isoform a | protein | 133 | 12% helix, 43% strand | Q9VHP9 |
| B | Centromeric protein-C, isoform a | protein | 142 | 15% helix, 42% strand | Q9VHP9 |
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 214 | 0.76 | 0.91 | 35 | empty |
Interfaces
1 interface between chains.
- A–B · 1965 Ų buried · 29 hydrogen bonds · protein-protein
Compared structures
- 6O2K · Drosophila melanogaster CENP-C cupin domain · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9VHP9
- Elsewhere: RCSB PDB 6O2K · PDBe 6O2K · UniProt Q9VHP9
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